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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JX047817.1 nt Prostanthera petraea voucher Wilson... 1477 bp Prostanthera petraea QL-PLN-00-007 567 bp View
JX047818.1 nt Prostanthera phylicifolia voucher W... 1465 bp Prostanthera phylicifolia QL-PLN-00-007 567 bp View
JX047819.1 nt Prostanthera porcata voucher Wilson... 1471 bp Prostanthera porcata QL-PLN-00-007 567 bp View
JX047820.1 nt Prostanthera prunelloides voucher W... 1479 bp Prostanthera prunelloides QL-PLN-00-007 567 bp View
JX047821.1 nt Prostanthera rhombea voucher Wilson... 1460 bp Prostanthera rhombea QL-PLN-00-007 569 bp View
JX047822.1 nt Prostanthera ringens voucher Wilson... 1471 bp Prostanthera ringens QL-PLN-00-007 567 bp View
JX047823.1 nt Prostanthera rotundifolia voucher W... 1483 bp Prostanthera rotundifolia QL-PLN-00-007 567 bp View
JX047824.1 nt Prostanthera rotundifolia voucher A... 1481 bp Prostanthera rotundifolia QL-PLN-00-007 567 bp View
JX047825.1 nt Prostanthera rugosa voucher Wilson ... 1497 bp Prostanthera rugosa QL-PLN-00-007 567 bp View
JX047826.1 nt Prostanthera saxicola voucher Wilso... 1475 bp Prostanthera saxicola QL-PLN-00-007 570 bp View
JX047827.1 nt Prostanthera saxicola voucher Wilso... 1473 bp Prostanthera saxicola QL-PLN-00-007 568 bp View
JX047828.1 nt Prostanthera scutellarioides vouche... 1463 bp Prostanthera scutellarioides QL-PLN-00-007 567 bp View
JX047829.1 nt Prostanthera sejuncta voucher Wilso... 1471 bp Prostanthera sejuncta QL-PLN-00-007 572 bp View
JX047830.1 nt Prostanthera serpyllifolia voucher ... 1473 bp Prostanthera serpyllifolia QL-PLN-00-007 568 bp View
JX047831.1 nt Prostanthera sieberi voucher Wilson... 1481 bp Prostanthera sieberi QL-PLN-00-007 567 bp View
JX047832.1 nt Prostanthera tallowa voucher Conn 5... 1468 bp Prostanthera tallowa QL-PLN-00-007 569 bp View
JX047833.1 nt Prostanthera spinosa voucher Wilson... 1479 bp Prostanthera spinosa QL-PLN-00-007 567 bp View
JX047834.1 nt Prostanthera staurophylla voucher W... 1477 bp Prostanthera staurophylla QL-PLN-00-007 573 bp View
JX047835.1 nt Prostanthera stenophylla voucher Al... 1505 bp Prostanthera stenophylla QL-PLN-00-007 567 bp View
JX047836.1 nt Prostanthera striatiflora voucher J... 1459 bp Prostanthera striatiflora QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.