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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HG970778.1 nt Ixora philippinensis chloroplast tr... 1633 bp Ixora philippinensis QL-PLN-00-007 565 bp View
HG970779.1 nt Ixora philippinensis chloroplast tr... 1658 bp Ixora philippinensis QL-PLN-00-007 565 bp View
HG970780.1 nt Ixora philippinensis chloroplast tr... 1694 bp Ixora philippinensis QL-PLN-00-007 565 bp View
HG970781.1 nt Ixora philippinensis chloroplast tr... 1577 bp Ixora philippinensis QL-PLN-00-007 545 bp View
HG970782.1 nt Ixora sp. CB-2014b chloroplast trnT... 1717 bp Ixora sp. CB-2014b QL-PLN-00-007 559 bp View
HG970783.1 nt Ixora salicifolia chloroplast trnT-... 1690 bp Ixora salicifolia QL-PLN-00-007 565 bp View
HG970784.1 nt Ixora salicifolia chloroplast trnT-... 1683 bp Ixora salicifolia QL-PLN-00-007 565 bp View
HG970785.1 nt Ixora salicifolia chloroplast trnT-... 1648 bp Ixora salicifolia QL-PLN-00-007 565 bp View
HG970786.1 nt Ixora salicifolia chloroplast trnT-... 1666 bp Ixora salicifolia QL-PLN-00-007 565 bp View
HG970787.1 nt Ixora sp. CB- 2013 chloroplast trnT... 1725 bp Ixora silagoensis QL-PLN-00-007 559 bp View
HG970788.1 nt Ixora sp. Alejandro 11-068 chloropl... 1698 bp Ixora sp. Alejandro 11-068 QL-PLN-00-007 565 bp View
HG970789.1 nt Ixora sp. Alejandro 12-406 chloropl... 1627 bp Ixora sp. Alejandro 12-406 QL-PLN-00-007 560 bp View
HG970790.1 nt Ixora sp. Chavez 13-315 chloroplast... 1744 bp Ixora sp. Chavez 13-315 QL-PLN-00-007 565 bp View
HG970791.1 nt Ixora sp. Chavez 13-336 chloroplast... 1732 bp Ixora sp. Chavez 13-336 QL-PLN-00-007 565 bp View
HG996477.1 nt Musa acuminata subsp. malaccensis s... 593221 bp Musa acuminata subsp. malaccensis QL-PLN-00-007 594 bp View
HG996477.1 nt Musa acuminata subsp. malaccensis s... 593221 bp Musa acuminata subsp. malaccensis QL-PLN-00-007 594 bp View
HG996477.1 nt Musa acuminata subsp. malaccensis s... 593221 bp Musa acuminata subsp. malaccensis QL-PLN-00-007 594 bp View
HG996521.1 nt Oryza sativa genome assembly, organ... 134533 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996570.1 nt Oryza sativa genome assembly, organ... 134534 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996572.1 nt Oryza sativa genome assembly, organ... 134565 bp Oryza sativa QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.