Match details
Record ID: |
HG970787.1 |
Database: |
nt |
Go to original record |
Description: |
Ixora sp. CB- 2013 chloroplast trnT-trnL intergenic spacer, partial sequence, tRNA-Leu gene, complete sequence, and trnL-trnF intergenic spacer, partial sequence, specimen voucher USTH:5858 |
Taxon: |
Ixora silagoensis |
Original size: |
1725 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
764 |
1322 |
+ |
559 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggtacagaa
151 agtgaaaagg ggataggtgc agagactcaa cggaagttgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaagtgaa agataaaggt atatacgtat tgaatactat atcaaatgat
301 taatgacgac tcgactgaat ctgtattttt tatatgaaaa cggaagaatt
351 ggtgtgaata gattccacat taaagaaaga atcgaatatt cattgattaa
401 atgattcact ccatagtctg cttttcaaga attgattaat cggacgagaa
451 taaagataga gccccgttct acatgtcaat gtcggcaaca atgaaattta
501 tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg ttcaagtccc
551 tctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.52e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
559 |
540 |
2.52e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.