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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HG970757.1 nt Ixora sp. CB-2014a chloroplast trnT... 1651 bp Ixora sp. CB-2014a QL-PLN-00-007 559 bp View
HG970758.1 nt Ixora angustilimba chloroplast trnT... 1684 bp Ixora angustilimba QL-PLN-00-007 565 bp View
HG970759.1 nt Ixora bartlingii chloroplast trnT-t... 1684 bp Ixora bartlingii QL-PLN-00-007 565 bp View
HG970760.1 nt Ixora bartlingii chloroplast trnT-t... 1517 bp Ixora bartlingii QL-PLN-00-007 531 bp View
HG970761.1 nt Ixora bibracteata chloroplast trnT-... 1831 bp Ixora bibracteata QL-PLN-00-007 565 bp View
HG970762.1 nt Ixora cordata chloroplast trnT-trnL... 1601 bp Ixora cordata QL-PLN-00-007 565 bp View
HG970763.1 nt Ixora cumingiana chloroplast trnT-t... 1688 bp Ixora cumingiana QL-PLN-00-007 565 bp View
HG970764.1 nt Ixora cumingiana chloroplast trnT-t... 1668 bp Ixora cumingiana QL-PLN-00-007 565 bp View
HG970765.1 nt Ixora finlaysoniana chloroplast trn... 1665 bp Ixora finlaysoniana QL-PLN-00-007 565 bp View
HG970766.1 nt Ixora fulgens chloroplast trnT-trnL... 1675 bp Ixora fulgens QL-PLN-00-007 565 bp View
HG970767.1 nt Ixora gigantifolia chloroplast trnT... 1664 bp Ixora gigantifolia QL-PLN-00-007 565 bp View
HG970768.1 nt Ixora leucocarpa chloroplast trnT-t... 1688 bp Ixora leucocarpa QL-PLN-00-007 565 bp View
HG970769.1 nt Ixora longistipula chloroplast trnT... 1626 bp Ixora longistipula QL-PLN-00-007 565 bp View
HG970770.1 nt Ixora luzoniensis chloroplast trnT-... 1370 bp Ixora luzoniensis QL-PLN-00-007 551 bp View
HG970771.1 nt Ixora macrophylla chloroplast trnT-... 1637 bp Ixora macrophylla QL-PLN-00-007 565 bp View
HG970772.1 nt Ixora macrophylla chloroplast trnT-... 1626 bp Ixora macrophylla QL-PLN-00-007 567 bp View
HG970773.1 nt Ixora magnifica chloroplast trnT-tr... 1649 bp Ixora magnifica QL-PLN-00-007 565 bp View
HG970774.1 nt Ixora myriantha chloroplast trnT-tr... 1688 bp Ixora myriantha QL-PLN-00-007 565 bp View
HG970775.1 nt Ixora palawaensis chloroplast trnT-... 1666 bp Ixora palawaensis QL-PLN-00-007 565 bp View
HG970776.1 nt Ixora palawaensis chloroplast trnT-... 1675 bp Ixora palawaensis QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.