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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FN386347.1 nt Pyrostria orbicularis trnT-trnL IGS... 1568 bp Pyrostria orbicularis QL-PLN-00-007 552 bp View
FN386348.1 nt Pyrostria pendula trnT-trnL IGS(par... 1664 bp Pyrostria pendula QL-PLN-00-007 552 bp View
FN386349.1 nt Pyrostria richardiae trnT-trnL IGS(... 1669 bp Pyrostria richardiae QL-PLN-00-007 552 bp View
FN386350.1 nt Pyrostria serpentina trnT-trnL IGS(... 1651 bp Pyrostria serpentina QL-PLN-00-007 551 bp View
FN386351.1 nt Pyrostria sp Rabenantoandro et al. ... 1666 bp Pyrostria sp. 1 Rabenantoandro et al. 770 QL-PLN-00-007 552 bp View
FN386352.1 nt Pyrostria sp Eriksson et al. 947 tr... 1655 bp Pyrostria sp. 3 Eriksson et al. 947 QL-PLN-00-007 552 bp View
FN386353.1 nt Pyrostria sp Mouly 600 trnT-trnL IG... 1665 bp Pyrostria sp. Mouly 600 QL-PLN-00-007 552 bp View
FN386354.1 nt Pyrostria sp LN 1207 trnT-trnL IGS(... 1673 bp Pyrostria sp. LN 1207 QL-PLN-00-007 552 bp View
FN386355.1 nt Pyrostria viburnoides trnT-trnL IGS... 1651 bp Pyrostria viburnoides QL-PLN-00-007 552 bp View
FN386356.1 nt Rytigynia humbertii trnT-trnL IGS(p... 1650 bp Rytigynia humbertii QL-PLN-00-007 552 bp View
FN386357.1 nt Rytigynia sp. Ranirison 624 trnT-tr... 1642 bp Rytigynia sp. Ranirison 624 QL-PLN-00-007 560 bp View
FN386358.1 nt Rytigynia sp. Karehed et al. 258 tr... 1662 bp Rytigynia sp. Karehed et al. 258 QL-PLN-00-007 552 bp View
FN386359.1 nt Rytigynia sp. Razafimandimbison & H... 1653 bp Rytigynia sp. Razafimandimbison & H. Bremer 486 QL-PLN-00-007 552 bp View
FN386360.1 nt Vangueriopsis lanciflora trnT-trnL ... 1669 bp Vangueriopsis lanciflora QL-PLN-00-007 556 bp View
FN386370.1 nt Canthium setiflorum trnT-trnL IGS(p... 911 bp Bullockia setiflora QL-PLN-00-007 552 bp View
FN794077.1 nt Verbena rigida chloroplast partial ... 933 bp Verbena rigida QL-PLN-00-007 553 bp View
FR667077.1 nt Gymnocalycium schickendantzii chlor... 850 bp Gymnocalycium schickendantzii QL-PLN-00-007 543 bp View
FR667080.1 nt Gymnocalycium marsoneri chloroplast... 1219 bp Gymnocalycium marsoneri QL-PLN-00-007 621 bp View
FR667094.1 nt Gymnocalycium pflanzii subsp. argen... 1211 bp Gymnocalycium pflanzii subsp. argentinense QL-PLN-00-007 620 bp View
FR667097.1 nt Gymnocalycium mihanovichii chloropl... 936 bp Gymnocalycium mihanovichii QL-PLN-00-007 542 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.