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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FN386324.1 nt Keetia hispida trnT-trnL IGS(partia... 1527 bp Keetia hispida QL-PLN-00-007 552 bp View
FN386326.1 nt Peponidium sp. SGR-2008 trnT-trnL I... 1670 bp Peponidium buxifolium QL-PLN-00-007 551 bp View
FN386327.1 nt Peponidium comorense trnT-trnL IGS(... 1679 bp Peponidium comorense QL-PLN-00-007 552 bp View
FN386328.1 nt Peponidium crassifolium trnT-trnL I... 1655 bp Peponidium crassifolium QL-PLN-00-007 552 bp View
FN386329.1 nt Peponidium horridum trnT-trnL IGS(p... 1658 bp Peponidium horridum QL-PLN-00-007 552 bp View
FN386330.1 nt Peponidium madagascariense trnT-trn... 1656 bp Peponidium madagascariense QL-PLN-00-007 544 bp View
FN386331.1 nt Peponidium sp. Karehed et al. 204 t... 1654 bp Peponidium sp. Karehed et al. 204 QL-PLN-00-007 552 bp View
FN386332.1 nt Peponidium sp. Karehed et al. 304 t... 1673 bp Peponidium sp. Karehed et al. 304 QL-PLN-00-007 552 bp View
FN386333.1 nt Peponidium sp. 1 Eriksson et al. 10... 1654 bp Peponidium sp. 1 Eriksson et al. 1009 QL-PLN-00-007 551 bp View
FN386334.1 nt Peponidium sp. 6 Razafimandimbison ... 1714 bp Peponidium sp. 6 Razafimandimbison & Andrianatoanina 458 QL-PLN-00-007 551 bp View
FN386336.1 nt Peponidium sp. 4 Davis 1133 trnT-tr... 1652 bp Peponidium sp. 4 Davis 1133 QL-PLN-00-007 552 bp View
FN386338.1 nt Peponidium venulosum trnT-trnL IGS(... 1652 bp Peponidium venulosum QL-PLN-00-007 552 bp View
FN386339.1 nt Pseudopeponidium sp. 1 Karehed et a... 1653 bp Pseudopeponidium sp. 1 Karehed et al. 222 QL-PLN-00-007 559 bp View
FN386340.1 nt Psydrax faulknerae trnT-trnL IGS(pa... 1694 bp Psydrax faulknerae QL-PLN-00-007 552 bp View
FN386341.1 nt Pygmaeothamnus sp. Bremer et al. 43... 1803 bp Pygmaeothamnus sp. Bremer et al. 4356 QL-PLN-00-007 552 bp View
FN386342.1 nt Pyrostria anjouanensis trnT-trnL IG... 1676 bp Pyrostria anjouanensis QL-PLN-00-007 552 bp View
FN386343.1 nt Pyrostria ixorifolia trnT-trnL IGS(... 1562 bp Pyrostria ixorifolia QL-PLN-00-007 552 bp View
FN386344.1 nt Pyrostria major trnT-trnL IGS(parti... 1671 bp Pyrostria major QL-PLN-00-007 552 bp View
FN386345.1 nt Pyrostria media trnT-trnL IGS(parti... 1666 bp Pyrostria media QL-PLN-00-007 552 bp View
FN386346.1 nt Pyrostria oleifolia trnT-trnL IGS(p... 1652 bp Pyrostria oleifolia QL-PLN-00-007 549 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.