Match details
Record ID: |
FN386334.1 |
Database: |
nt |
Go to original record |
Description: |
Peponidium sp. 6 Razafimandimbison & Andrianatoanina 458 trnT-trnL IGS(partial), tRNA-Leu gene, and trnL-trnF IGS (partial), specimen voucher TAN:Razafimandimbison & Andrianatoanina 458 |
Taxon: |
Peponidium sp. 6 Razafimandimbison & Andrianatoanina 458 |
Original size: |
1714 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
787 |
1337 |
+ |
551 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaacctgga attaataaaa
101 aggggcaatc ctgagccaaa tcctgttttc cgaaaccaaa ggttcagaaa
151 gtgaaaaagg gataggtgca gagactcaat ggaagctgtt ctaacaaatg
201 gagttggctg cgttagtaga gaaatctttc catcgaaaat tccgaaagga
251 taaaacgtat acgtattgaa tactatatca aatgattaat gacgactcga
301 ctgaatctgt attttttata tgaaaatgga agaattggtg tgaatagatt
351 ccacagtgaa gaaagaatcg aatattcatt gattaaatga ttcactccat
401 agtctgatag atcttttcaa gaattgatta atcggacgag aataaagata
451 gagtcccgtt ctacatgtca atgtcggcaa caatgaaatt tatagtaata
501 ggaaaatccg tcgactttaa aaatcgtgag ggttcaagtc cctctatccc
551 c
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
551 |
532 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.