Match details
Record ID: |
FN386346.1 |
Database: |
nt |
Go to original record |
Description: |
Pyrostria oleifolia trnT-trnL IGS(partial), tRNA-Leu gene and trnL-trnF IGS(partial), specimen voucher TAN:Razafimandimbison et al. 422 |
Taxon: |
Pyrostria oleifolia |
Original size: |
1652 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
788 |
1336 |
+ |
549 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattataaaa
101 aggggcaatc ctgagccaaa tcctgttttc cgaaaccaaa ggttcagaaa
151 gtgaaaaagg gataggtgca gagactcaat ggaagctgtt ctaacaaatg
201 gagttggctg cgttagtaga gaaatctttc catcgaaaat tccgaaagga
251 taaaacgtat acgtattgaa tactatatca aatgattaat gacgactcga
301 ctgaatctgt attttttata tgaaaatgga agaattggtg tgaatagatt
351 ccacattgaa gaaagaatcg aatattcatt gattaaatga ttcactccat
401 agtctgatag atcttttcaa gaattgatta atcggacgag aataaagata
451 gagtcccgtt ctacatgtca atgtcggcaa caatgaaatt tatagtaata
501 ggaatccgtc gactttaaaa atcgtgaggg ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.47e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
549 |
530 |
2.47e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.