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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FJ150581.1 nt Ixora scheffleri voucher Luke 9162 ... 1608 bp Ixora scheffleri QL-PLN-00-007 565 bp View
FJ150582.1 nt Ixora setchellii voucher Mouly et a... 1572 bp Ixora setchellii QL-PLN-00-007 565 bp View
FJ150585.1 nt Ixora sp. Karehed et al. 234 vouche... 1315 bp Ixora sp. Karehed et al. 234 QL-PLN-00-007 565 bp View
FJ150586.1 nt Ixora sp. Razafimandimbison et al. ... 1611 bp Ixora sp. Razafimandimbison et al. 519 QL-PLN-00-007 565 bp View
FJ150588.1 nt Ixora sp. Mouly s.n. voucher Mouly ... 1610 bp Ixora sp. Mouly s.n. QL-PLN-00-007 565 bp View
FJ150589.1 nt Ixora sp. Mouly & Innocente 215 vou... 1608 bp Ixora sp. Mouly & Innocente 215 QL-PLN-00-007 565 bp View
FJ150590.1 nt Ixora sp. Mouly & Innocente 272 vou... 1614 bp Ixora sp. Mouly & Innocente 272 QL-PLN-00-007 565 bp View
FJ150591.1 nt Ixora sp. Florence 3936 voucher Flo... 1614 bp Ixora sp. Florence 3936 QL-PLN-00-007 565 bp View
FJ150592.1 nt Ixora sp. Dagostini 859 voucher Dag... 1613 bp Ixora sp. Dagostini 859 QL-PLN-00-007 565 bp View
FJ150594.1 nt Ixora sp. Geesink et al. 7226 vouch... 1609 bp Ixora sp. Geesink et al. 7226 QL-PLN-00-007 565 bp View
FJ150596.1 nt Ixora sp. Vidal 5758B voucher Vidal... 1599 bp Ixora sp. Vidal 5758B QL-PLN-00-007 565 bp View
FJ150597.1 nt Ixora sp. Nissen 89BIO01344 DN89 vo... 1604 bp Ixora sp. Nissen 89BIO01344 DN89 QL-PLN-00-007 565 bp View
FJ150599.1 nt Ixora sp. Malcomber et al. 2980 vou... 1603 bp Ixora sp. Malcomber et al. 2980 QL-PLN-00-007 560 bp View
FJ150600.1 nt Ixora sp. Larsen et al. 86KL14 vouc... 1607 bp Ixora sp. Larsen et al. 86KL14 QL-PLN-00-007 565 bp View
FJ150601.1 nt Ixora st-johnii voucher Mouly 450 (... 1611 bp Ixora st-johnii QL-PLN-00-007 565 bp View
FJ150602.1 nt Ixora javanica voucher Munzinger 11... 1610 bp Ixora javanica QL-PLN-00-007 565 bp View
FJ150604.1 nt Ixora triantha voucher Stone 16019 ... 1609 bp Ixora triantha QL-PLN-00-007 566 bp View
FJ150605.1 nt Ixora trichocalyx voucher Schatz et... 1604 bp Ixora trichocalyx QL-PLN-00-007 565 bp View
FJ150606.1 nt Ixora vieillardii voucher Mouly et ... 1608 bp Ixora vieillardii QL-PLN-00-007 566 bp View
FJ150607.1 nt Ixora yaouhensis voucher Mouly 153 ... 1557 bp Ixora yaouhensis QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.