Match details
Record ID: |
FJ150599.1 |
Database: |
nt |
Go to original record |
Description: |
Ixora sp. Malcomber et al. 2980 voucher Malcomber et al. 2980 (MO) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Ixora sp. Malcomber et al. 2980 |
Original size: |
1603 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
747 |
1306 |
+ |
560 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccaaaaccaa aggtacagaa
151 agtgaaaagg ggataggtgc agagactcaa cggaagttgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaagtgaa agataaaggt atatacgtat tgaatactat atcaaatgat
301 taatgacgac tcgactgaat ctttttatat gaaaacggaa gaattggtgt
351 gaatagattc cacattaaag aaagaatcga atattcattg attaaatgat
401 tcactccata gtctgataga tcttttcaag aattgattaa tcggacgaga
451 ataaagatag agccccgttc tacatgtcaa tgtcggcaac aatgaaattt
501 atagtaagag gaaaatccgt cgactttaaa aatcgtgagg gttcaagtcc
551 ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.52e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
560 |
541 |
2.52e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.