Match details
Record ID: |
FJ150604.1 |
Database: |
nt |
Go to original record |
Description: |
Ixora triantha voucher Stone 16019 (P) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Ixora triantha |
Original size: |
1609 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
745 |
1310 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggga
51 aacccactaa gtgataactt tcaaattcag agaaaccctg gaattaataa
101 aaaggggcaa tcctgagcca aatcctgttt tccgaaacca aaggtagaga
151 aagtgaaaag gggataggtg cagagactca acggaagttg ttctaacaaa
201 tggagttggc tgcgttagta gagaaatctt tccatcgaaa attccgaaag
251 gataaagtga aagataaagg tatatacgta ttgaatacta tatcaaatga
301 ttaatgacga ctcgactgaa tctgtatttt ttatatgaaa acggaagaat
351 tggtgtgaat agattccaca ttaaagaaag aatcgaatat tcattgatta
401 aatgattcac tccatagtct gatagatctt ttcaagaatt gattaatcgg
451 acaagaataa agatagagcc ccgttctaca tgtcaatgtc ggcaacaatg
501 aaatttatag taagaggaaa atccgtcgac tttaaaaatc gtgagggttc
551 aagtccctct atcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.