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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU828204.1 nt Agalinis tenuifolia isolate 5IA tRN... 1605 bp Agalinis tenuifolia QL-PLN-00-007 553 bp View
EU828205.1 nt Agalinis viridis isolate 2LA tRNA-T... 1622 bp Agalinis viridis QL-PLN-00-007 552 bp View
EU828206.1 nt Agalinis viridis isolate 9IL tRNA-T... 1626 bp Agalinis viridis QL-PLN-00-007 552 bp View
EU828207.1 nt Aureolaria pectinata isolate 1 tRNA... 1628 bp Aureolaria pectinata QL-PLN-00-007 546 bp View
EU828208.1 nt Aureolaria pedicularia isolate 3 tR... 1571 bp Aureolaria pedicularia QL-PLN-00-007 546 bp View
EU828209.1 nt Brachystigma wrightii isolate 1 tRN... 1667 bp Brachystigma wrightii QL-PLN-00-007 552 bp View
EU828210.1 nt Dasistoma macrophylla isolate a1 tR... 1663 bp Dasistoma macrophylla QL-PLN-00-007 551 bp View
EU854591.1 nt Puccinellia vahliana tRNA-Thr (trnT... 1723 bp Puccinellia vahliana QL-PLN-00-007 611 bp View
EU920056.1 nt Urochloa panicoides tRNA-Leu gene, ... 912 bp Urochloa panicoides QL-PLN-00-007 617 bp View
FJ150537.1 nt Ixora sp. AM-2009 voucher Munzinger... 1606 bp Ixora sp. AM-2009 QL-PLN-00-007 565 bp View
FJ150538.1 nt Ixora sp. AM-2009 voucher Munzinger... 1614 bp Ixora sp. AM-2009 QL-PLN-00-007 565 bp View
FJ150540.1 nt Cyclophyllum merrillianum voucher M... 1610 bp Cyclophyllum merrillianum QL-PLN-00-007 552 bp View
FJ150541.1 nt Ixora aluminicola voucher Prevost 4... 1437 bp Ixora aluminicola QL-PLN-00-007 565 bp View
FJ150543.1 nt Ixora bauchiensis voucher Fotius 30... 1498 bp Ixora bauchiensis QL-PLN-00-007 565 bp View
FJ150545.1 nt Ixora brachypoda voucher Walters et... 1622 bp Ixora brachypoda QL-PLN-00-007 565 bp View
FJ150546.1 nt Ixora calycina voucher Tirvengadume... 1533 bp Ixora calycina QL-PLN-00-007 565 bp View
FJ150547.1 nt Ixora casei voucher Mouly & Florenc... 1556 bp Ixora casei QL-PLN-00-007 565 bp View
FJ150548.1 nt Ixora cauliflora voucher Mouly & In... 1599 bp Ixora cauliflora QL-PLN-00-007 565 bp View
FJ150550.1 nt Ixora collina voucher Mouly & Innoc... 1606 bp Ixora collina QL-PLN-00-007 565 bp View
FJ150551.1 nt Ixora comptonii voucher Munzinger 1... 1609 bp Ixora comptonii QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.