Match details
Record ID: |
EU828210.1 |
Database: |
nt |
Go to original record |
Description: |
Dasistoma macrophylla isolate a1 tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Dasistoma macrophylla |
Original size: |
1663 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
725 |
1275 |
+ |
551 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101 aaagggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa ggataggtgc agagactcaa tggaagctgt tctaacaaat
201 ggagttgatt gcgctgatag aggaatgaaa cttcagaaag gataaggata
251 tacgtatcta ttgaatacta tatcaaaatc aaatgattga ttaatgatgg
301 cccaaatcta gatctgtatt tttgaatacg aaaagtggaa gaattggtgt
351 gaatttcttc cataaagaat attcattcat caaatcattc actccatagt
401 ccgatagatc ttttttaaaa gatctgatta atcggacgag aataaagata
451 gagtcccatt ctacatgtca ataccggcaa caatgaaatt tatagtaaaa
501 ggaaaatccg tcgactttta aaatcgtgag ggttcaagtc cctctatccc
551 c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
551 |
532 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.