Match details
Record ID: |
EU828209.1 |
Database: |
nt |
Go to original record |
Description: |
Brachystigma wrightii isolate 1 tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Brachystigma wrightii |
Original size: |
1667 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
727 |
1278 |
+ |
552 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101 aaagggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttgat tgcgctgata gaggaatgaa acttcagaaa ggatgaaggg
251 taaacgtatc tattgaatac tatatcaaaa tcaaatgatt gattaatgat
301 ggcccaaatc tgtatctgta tttttgaata cgaaaagtgg aagaattggt
351 gtgaatttct tccataaaga atattcattc atcaaatcat tcactccata
401 gtccgataga tctttttaaa agatctgatt aatcggacga gaataaagat
451 agagtcccat tctacatgtc aataccggca acaatgaaat ttatagtaaa
501 aggaaaatcc gtcgactttt aaaatcgtga gggttcaagt ccctctatcc
551 cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
552 |
533 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.