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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU792460.1 nt Poa fax voucher Jacobs 9339 NSW tRN... 1807 bp Poa fax QL-PLN-00-007 611 bp View
EU792463.1 nt Deschampsia antarctica voucher Pete... 1739 bp Deschampsia antarctica QL-PLN-00-007 613 bp View
EU792468.1 nt Dissanthelium brevifolium voucher P... 1807 bp Poa parvifolia QL-PLN-00-007 618 bp View
EU792472.1 nt Poa bulbosa voucher Soreng 5958 US ... 1723 bp Poa bulbosa QL-PLN-00-007 611 bp View
EU817452.1 nt Alberta minor trnT-trnL intergenic ... 1638 bp Razafimandimbisonia minor QL-PLN-00-007 559 bp View
EU817454.1 nt Augusta austrocaledonica trnT-trnL ... 1703 bp Augusta austrocaledonica QL-PLN-00-007 567 bp View
EU817455.1 nt Aulacocalyx jasminiflora trnT-trnL ... 1667 bp Aulacocalyx jasminiflora QL-PLN-00-007 567 bp View
EU817456.1 nt Captaincookia margaretae trnT-trnL ... 1602 bp Ixora margaretae QL-PLN-00-007 565 bp View
EU817457.1 nt Doricera trilocularis trnT-trnL int... 1668 bp Ixora trilocularis QL-PLN-00-007 566 bp View
EU817458.1 nt Greenea sp. Beusekom 752 trnT-trnL ... 1610 bp Greenea sp. Beusekom 752 QL-PLN-00-007 566 bp View
EU817459.1 nt Greenea oblonga trnT-trnL intergeni... 1727 bp Greenea oblonga QL-PLN-00-007 566 bp View
EU817460.1 nt Greenea sp. Larsen 33378 trnT-trnL ... 1704 bp Greenea sp. Larsen 33378 QL-PLN-00-007 566 bp View
EU817461.1 nt Greenea sp. Larsen 43140 trnT-trnL ... 1657 bp Greenea sp. Larsen 43140 QL-PLN-00-007 566 bp View
EU817462.1 nt Ixora moorensis trnT-trnL intergeni... 1604 bp Ixora moorensis QL-PLN-00-007 565 bp View
EU817463.1 nt Ixora brachypoda trnT-trnL intergen... 1685 bp Ixora brachypoda QL-PLN-00-007 565 bp View
EU817464.1 nt Ixora coccinea trnT-trnL intergenic... 1720 bp Ixora coccinea QL-PLN-00-007 565 bp View
EU817465.1 nt Ixora ferrea trnT-trnL intergenic s... 1669 bp Ixora ferrea QL-PLN-00-007 565 bp View
EU817466.1 nt Ixora finlaysoniana trnT-trnL inter... 1674 bp Ixora finlaysoniana QL-PLN-00-007 565 bp View
EU817467.1 nt Ixora guineensis trnT-trnL intergen... 1667 bp Ixora guineensis QL-PLN-00-007 565 bp View
EU817468.1 nt Ixora hookeri trnT-trnL intergenic ... 1657 bp Ixora hookeri QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.