Match details
Record ID: |
EU817459.1 |
Database: |
nt |
Go to original record |
Description: |
Greenea oblonga trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Greenea oblonga |
Original size: |
1727 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
762 |
1327 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggtacagaa
151 agtgaaaaag ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaagtgaa agataaacgt atatacgtat tgaatactat atcaaatgat
301 taatgacgac tcgactgaat ctgtattttt tatatgaaaa acggaagaat
351 tggtgtgaat agattccaca ttgaagaaag aatcgaatat tcattgatta
401 aatgattcac tccatagtct gatagatctt ttcaagaatt gattaatcgg
451 acgagaataa agatagagcc ctgttttaca tgtcaatgtt ggcaacaatg
501 aaatttatag taagaggaaa atccgtcgac tttaaaaatc gtgagggttc
551 aagtccctct atcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.