Match details
Record ID: |
EU792472.1 |
Database: |
nt |
Go to original record |
Description: |
Poa bulbosa voucher Soreng 5958 US trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Poa bulbosa |
Original size: |
1723 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
717 |
1327 |
+ |
611 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acttgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttcgaaa
251 ttctaaaaag aagggcttta tacagctaat aaacacgtat agatactgag
301 atagcaaacg attaatcaca gaacccatat tataatattg gttctttatt
351 cttttttaga atgaaataga aatgattatg aaataaaaaa ttcataattt
401 ttttagaatt attgtgaatc cattccaatc gaatatttag taatcaaatc
451 cttcaattca aagttttgag gtctttaaaa aagtggatta atcggacgag
501 gacaaagaga gagtcccatt ctacatgtca atactgacaa caatgaaatt
551 tctagtaaaa ggaaaatccg tcgactttat aagtcgtgag ggttcaagtc
601 cctctatccc c
View other 6 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
611 |
592 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.