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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF688804.1 nt Heliotropium nicotianifolium vouche... 1019 bp Heliotropium nicotianifolium QL-PLN-00-007 575 bp View
EF688806.1 nt Heliotropium arborescens voucher 88... 1039 bp Heliotropium arborescens QL-PLN-00-007 577 bp View
EF688807.1 nt Tiquilia paronychioides voucher 879... 943 bp Tiquilia paronychioides QL-PLN-00-007 566 bp View
EF688808.1 nt Heliotropium floridum voucher 2838 ... 1052 bp Heliotropium floridum QL-PLN-00-007 582 bp View
EF688809.1 nt Heliotropium inconspicuum voucher 2... 1021 bp Heliotropium inconspicuum QL-PLN-00-007 582 bp View
EF688811.1 nt Heliotropium sclerocarpum voucher 2... 1032 bp Heliotropium sclerocarpum QL-PLN-00-007 582 bp View
EF688812.1 nt Heliotropium eremogenum voucher 257... 1011 bp Heliotropium eremogenum QL-PLN-00-007 582 bp View
EF688813.1 nt Heliotropium pycnophyllum voucher 2... 1053 bp Heliotropium pycnophyllum QL-PLN-00-007 582 bp View
EF688814.1 nt Heliotropium taltalense voucher 265... 1029 bp Heliotropium taltalense QL-PLN-00-007 582 bp View
EF688815.1 nt Heliotropium pycnophyllum voucher 2... 1064 bp Heliotropium pycnophyllum QL-PLN-00-007 582 bp View
EF688818.1 nt Heliotropium sinuatum voucher 2492 ... 1011 bp Heliotropium sinuatum QL-PLN-00-007 582 bp View
EF688819.1 nt Heliotropium chenopodiaceum voucher... 1011 bp Heliotropium chenopodiaceum QL-PLN-00-007 582 bp View
EF688821.1 nt Heliotropium huascoense voucher 290... 1012 bp Heliotropium huascoense QL-PLN-00-007 582 bp View
EF688824.1 nt Heliotropium huascoense voucher 216... 1032 bp Heliotropium huascoense QL-PLN-00-007 582 bp View
EF688826.1 nt Heliotropium glutinosum voucher 216... 1011 bp Heliotropium glutinosum QL-PLN-00-007 582 bp View
EF688827.1 nt Heliotropium sp. 2159 tRNA-Leu (trn... 1032 bp Heliotropium sp. 2159 QL-PLN-00-007 582 bp View
EF688828.1 nt Heliotropium sinuatum voucher 1972 ... 1055 bp Heliotropium sinuatum QL-PLN-00-007 581 bp View
EF688829.1 nt Heliotropium filifolium voucher 197... 1054 bp Heliotropium filifolium QL-PLN-00-007 582 bp View
EF688830.1 nt Heliotropium longistylum voucher 19... 1026 bp Heliotropium longistylum QL-PLN-00-007 581 bp View
EF688831.1 nt Heliotropium floridum voucher 1974 ... 1051 bp Heliotropium floridum QL-PLN-00-007 582 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.