Match details
Record ID: |
EF688828.1 |
Database: |
nt |
Go to original record |
Description: |
Heliotropium sinuatum voucher 1972 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Heliotropium sinuatum |
Original size: |
1055 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
26 |
606 |
+ |
581 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ccgaaaacaa agaaaggttc
151 agaaagcaaa aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatggggtt gactgcattg gtcgaggaat ctttctatcg agacttcaga
251 aaggatgaag gataaacgta tatacatatg tattcaatac tctatcaaat
301 gaaatgatta atgacgaccc taatctgttc tgtttttttt atgaaaaaaa
351 aggaagaatt ggtgtgaatc gattccacat tgaagttgaa gaaagaaccg
401 aatattcatt gatcaaatca ctcactccat agtctgatag ttcttttgaa
451 gaactgatta atcggacgag aataaagata gagtcccgtt ctacatgtca
501 ataccggcaa caatgaaatt tatagtaaga ggaaaatccg tcgactttaa
551 aaatcgtgag ggttcaagtc cctctatccc c
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
581 |
562 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.