Match details
Record ID: |
EF688804.1 |
Database: |
nt |
Go to original record |
Description: |
Heliotropium nicotianifolium voucher 53890 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Heliotropium nicotianifolium |
Original size: |
1019 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
576 |
+ |
575 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aacgggcaat cctgagccaa atcctgtttt ccgaaaacaa agaaaggttc
151 agaaagcaaa aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatggggtt gactgcattg gtcgaggaat ctttctatcg agacttcaga
251 aaggatgaag gataaacgta tatacatatg tattcaatac tctatcaaat
301 gaaatgatta atgacgaccc taatctgttc tgtttttttt akraaaaaaa
351 aggaagaatt ggtgtgaatc gattccacat taaagaaaga accgaatatt
401 cattgatcaa atcactcact ccatagtctg atagctcttt tgaagaactg
451 attaatcgga cgagaataaa gatagagtcc cgttctacat gtcaataccg
501 gcaacaatga aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg
551 tgagggttca agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.59e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
575 |
556 |
2.59e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.