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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ916876.1 nt Finlaysonia lanuginosa voucher Livs... 1692 bp Finlaysonia lanuginosa QL-PLN-00-007 566 bp View
DQ916877.1 nt Hemidesmus indicus voucher Civeyrel... 1684 bp Hemidesmus indicus QL-PLN-00-007 565 bp View
DQ916878.1 nt Mondia whitei voucher ex hort. Olle... 1666 bp Mondia whitei QL-PLN-00-007 546 bp View
DQ916879.1 nt Pentopetia longipetala voucher Allo... 1684 bp Pentopetia longipetala QL-PLN-00-007 566 bp View
DQ916880.1 nt Periploca calophylla voucher Liu Zh... 1659 bp Periploca calophylla QL-PLN-00-007 566 bp View
DQ916881.1 nt Periploca graeca voucher ex hort. E... 1690 bp Periploca graeca QL-PLN-00-007 566 bp View
DQ916882.1 nt Periploca laevigata voucher Fernand... 1677 bp Periploca laevigata QL-PLN-00-007 566 bp View
DQ916883.1 nt Phyllanthera grayi voucher Forster ... 1682 bp Phyllanthera grayi QL-PLN-00-007 562 bp View
DQ916884.1 nt Raphionacme galpinii voucher Abbott... 1686 bp Raphionacme galpinii QL-PLN-00-007 566 bp View
DQ916885.1 nt Tacazzea apiculata voucher Renvoize... 1686 bp Tacazzea apiculata QL-PLN-00-007 566 bp View
DQ916886.1 nt Zygostelma benthami voucher Middlet... 1690 bp Zygostelma benthamii QL-PLN-00-007 565 bp View
EA679622.1 emblrelpat Sequence 58501 from patent US 7365185. 36527 bp unidentified QL-PLN-00-007 614 bp View
EA703943.1 emblrelpat Sequence 82822 from patent US 7365185. 4745 bp unidentified QL-PLN-00-007 615 bp View
EF017314.1 nt Taxus x hunnewelliana tRNA-Leu (trn... 898 bp Taxus x hunnewelliana QL-PLN-00-007 522 bp View
EF017315.1 nt Cephalotaxus latifolia voucher FCH0... 830 bp Cephalotaxus latifolia QL-PLN-00-007 546 bp View
EF177383.1 nt Caesalpinia caladenia tRNA-Leu (trn... 1079 bp Erythrostemon caladenia QL-PLN-00-007 603 bp View
EF177389.1 nt Caesalpinia eriostachys tRNA-Leu (t... 1085 bp Cenostigma eriostachys QL-PLN-00-007 591 bp View
EF205629.1 nt Canthium cystiporon trnT-trnL inter... 1705 bp Peponidium cystiporon QL-PLN-00-007 552 bp View
EF205630.1 nt Cyclophyllum balansae trnT-trnL int... 1641 bp Cyclophyllum balansae QL-PLN-00-007 552 bp View
EF205631.1 nt Cyclophyllum deplanchei trnT-trnL i... 1643 bp Cyclophyllum deplanchei QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.