Match details
Record ID: |
DQ916886.1 |
Database: |
nt |
Go to original record |
Description: |
Zygostelma benthami voucher Middleton 849 (A) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Zygostelma benthamii |
Original size: |
1690 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
798 |
1362 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtaaggaa
51 acctactaag tgatgacttt caaattcaga gaaaccccgg aattaataaa
101 aagggcaatc ctgagccaaa tcctatttta cacaaacaaa ggttcagaaa
151 acgaaaaaag gataggtgca gagactcgac ggaagatgtt ctaacaaatg
201 gagttggccg cgttggtaaa gaaatccttc catcgaaaat tcagaaagga
251 tgaaggataa acacatatac atacgtattg aatactatat caaatgatta
301 tgccgacccg aatgaatctg tattttttct ataaaaaacg gaagaattgg
351 tgtgagtcga ttctttcttc aatgtggaat cgaatattca ttgatcaaat
401 gattcactcc atagtctgta gatccccttt tcaagaacgg attaatcgga
451 cgagaataaa gatagagtcc cgttctacat gtcaatgtcg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact taaaaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.