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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR260168.1 nt Hemerocallis hybrid cultivar cultiv... 156060 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260169.1 nt Hemerocallis hybrid cultivar cultiv... 156053 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260170.1 nt Hemerocallis hybrid cultivar isolat... 156053 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260171.1 nt Hemerocallis citrina cultivar Qingz... 156109 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260172.1 nt Hemerocallis citrina isolate 154 cu... 156110 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260174.1 nt Hemerocallis citrina isolate 182 ch... 155852 bp Hemerocallis citrina QL-PLN-00-007 587 bp View
OR260175.1 nt Hemerocallis hybrid cultivar isolat... 156051 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260176.1 nt Hemerocallis hybrid cultivar isolat... 156082 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260177.1 nt Hemerocallis hybrid cultivar cultiv... 156060 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260178.1 nt Hemerocallis citrina isolate Meng c... 156110 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260179.1 nt Hemerocallis citrina cultivar Chazi... 156089 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260539.1 nt Ceropegia sp. PL-2023a chloroplast,... 161376 bp Ceropegia sunhangiana QL-PLN-00-007 557 bp View
OR260547.1 nt Diospyros kaki var. silvestris chlo... 157732 bp Diospyros kaki var. silvestris QL-PLN-00-007 586 bp View
OR263673.1 nt Callicarpa sp. XL-2023a voucher Xu ... 154613 bp Callicarpa sp. XL-2023a QL-PLN-00-007 562 bp View
OR327040.1 nt Luffa aegyptiaca chloroplast, compl... 157296 bp Luffa aegyptiaca QL-PLN-00-007 593 bp View
OR335763.1 nt Gynostemma pentaphyllum chloroplast... 157706 bp Gynostemma pentaphyllum QL-PLN-00-007 609 bp View
OR344064.1 nt Gynostemma pentaphyllum voucher ls1... 157597 bp Gynostemma pentaphyllum QL-PLN-00-007 609 bp View
OR344069.1 nt Gynostemma pentaphyllum voucher sxk... 157721 bp Gynostemma pentaphyllum QL-PLN-00-007 609 bp View
OR344070.1 nt Gynostemma pentaphyllum voucher sxp... 157721 bp Gynostemma pentaphyllum QL-PLN-00-007 609 bp View
OR344071.1 nt Gynostemma pentaphyllum voucher xy7... 157705 bp Gynostemma pentaphyllum QL-PLN-00-007 609 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.