Match details
Record ID: |
OR263673.1 |
Database: |
nt |
Go to original record |
Description: |
Callicarpa sp. XL-2023a voucher Xu & Li 230155 chloroplast, complete genome. |
Taxon: |
Callicarpa sp. XL-2023a |
Original size: |
154613 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48208 |
48769 |
+ |
562 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151 aacgaaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgcgttggt agaggaatct ttccatggaa acttcagaaa
251 ggatgaagga taaacgtatc tattgaatac tatatcaaat gattaatgat
301 ggcccgaatc tgtatctgta ttttttaata tgaaaaatgg aagaattggt
351 gtgaattgat tccacattga agaaaaaatc gaatattcat tcatcaaatc
401 attcactcca taggccgata gatcttttaa agaactgatt aatcggacga
451 gaataaagat agagtcccat tctacatgtc aataccggca acaatgaaat
501 ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt
551 ccctctatcc cc
View other 6 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.