JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

562 bp

1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgagaacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151   aacgaaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201   atggagttga ctgcgttggt agaggaatct ttccatggaa acttcagaaa
251   ggatgaagga taaacgtatc tattgaatac tatatcaaat gattaatgat
301   ggcccgaatc tgtatctgta ttttttaata tgaaaaatgg aagaattggt
351   gtgaattgat tccacattga agaaaaaatc gaatattcat tcatcaaatc
401   attcactcca taggccgata gatcttttaa agaactgatt aatcggacga
451   gaataaagat agagtcccat tctacatgtc aataccggca acaatgaaat
501   ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt
551   ccctctatcc cc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
MZ424313.1	nt	Callicarpa rubella chloroplast, com...	154140 bp	Callicarpa rubella	QL-PLN-00-007	562 bp	View
OR263673.1	nt	Callicarpa sp. XL-2023a voucher Xu ...	154613 bp	Callicarpa sp. XL-2023a	QL-PLN-00-007	562 bp	View
MW149076.1	nt	Callicarpa longifolia var. floccosa...	154285 bp	Callicarpa longifolia var. floccosa	QL-PLN-00-007	562 bp	View
MW252167.1	nt	Callicarpa formosana chloroplast, c...	154251 bp	Callicarpa formosana	QL-PLN-00-007	562 bp	View
MW788028.1	nt	Callicarpa integerrima var. chinens...	154179 bp	Callicarpa integerrima var. chinensis	QL-PLN-00-007	562 bp	View
MK783316.1	nt	Callicarpa nudiflora chloroplast, p...	154080 bp	Callicarpa nudiflora	QL-PLN-00-007	562 bp	View
MW829279.1	nt	Callicarpa macrophylla chloroplast,...	154141 bp	Callicarpa macrophylla	QL-PLN-00-007	562 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.