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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
BK061469.1 nt TPA_asm: Zea mays subsp. parviglumi... 140425 bp Zea mays subsp. parviglumis QL-PLN-00-007 532 bp View
BK061470.1 nt TPA_asm: Zea mays subsp. parviglumi... 140457 bp Zea mays subsp. parviglumis QL-PLN-00-007 532 bp View
BK061471.1 nt TPA_asm: Zea mays subsp. parviglumi... 140459 bp Zea mays subsp. parviglumis QL-PLN-00-007 532 bp View
BX119951.3 nt Oryza sativa chromosome 12, . BAC O... 127267 bp Oryza sativa QL-PLN-00-007 614 bp View
BX569685.1 nt Oryza sativa genomic DNA, chromosom... 145980 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
CP018170.1 nt Oryza sativa Indica Group cultivar ... 134546 bp Oryza sativa Indica Group QL-PLN-00-007 615 bp View
CP054687.1 nt Oryza sativa Indica Group cultivar ... 26942889 bp Oryza sativa Indica Group QL-PLN-00-007 615 bp View
CP054688.1 nt Oryza sativa Indica Group cultivar ... 134506 bp Oryza sativa Indica Group QL-PLN-00-007 615 bp View
CP056052.1 nt Oryza sativa Indica Group cultivar ... 44754788 bp Oryza sativa Indica Group QL-PLN-00-007 615 bp View
CP056063.1 nt Oryza sativa Indica Group cultivar ... 27232431 bp Oryza sativa Indica Group QL-PLN-00-007 615 bp View
CP056064.1 nt Oryza sativa Indica Group cultivar ... 134501 bp Oryza sativa Indica Group QL-PLN-00-007 615 bp View
CP101141.1 nt Oryza sativa Japonica Group cultiva... 24418402 bp Oryza sativa Japonica Group QL-PLN-00-007 614 bp View
CP101145.1 nt Oryza sativa Japonica Group cultiva... 28379153 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
CP101147.1 nt Oryza sativa Japonica Group cultiva... 43598337 bp Oryza sativa Japonica Group QL-PLN-00-007 613 bp View
CP101150.1 nt Oryza sativa Japonica Group cultiva... 35158174 bp Oryza sativa Japonica Group QL-PLN-00-007 614 bp View
CP132235.1 nt Oryza sativa Japonica Group cultiva... 43929697 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
CP132238.1 nt Oryza sativa Japonica Group cultiva... 36078568 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
CP132244.1 nt Oryza sativa Japonica Group cultiva... 23931887 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
CP132244.1 nt Oryza sativa Japonica Group cultiva... 23931887 bp Oryza sativa Japonica Group QL-PLN-00-007 593 bp View
CP132244.1 nt Oryza sativa Japonica Group cultiva... 23931887 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.