Match details
Record ID: |
BX119951.3 |
Database: |
nt |
Go to original record |
Description: |
Oryza sativa chromosome 12, . BAC OJ1523_A01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice) |
Taxon: |
Oryza sativa |
Original size: |
127267 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
88716 |
89329 |
- |
614 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggcaatttc caaattcaga gaaaccctgg aattaaaaaa
101 ggggcaatcc tgagccaatc catgttttga gaaaacaagt ggttctcgaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg agttaattac gttgtgttgc tagcggaact cccttctaaa
251 ttagggaaag aagggctttc gaaatctaat acacacgtat agatactggc
301 atagcaaatg attaatcaca gaactcatat cataatatag gttctttaat
351 tcttttttaa aatgaaaata ggaatgatta tgaaatagaa aattcataat
401 ttttttagaa ttgttgtgaa tccattccaa tcgaatattg agtaatcaaa
451 tccttcaatt catagttttc gaaatctttt taaaagtgga ttaatcggac
501 gaggataaag agagagtccc attctacatg tcaatactga caacaatgaa
551 atttctagta aaaggaaaat ccgtcgactt tctaagtcgt gagggttcaa
601 gtccctctat cccc
View other 9 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.77e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
614 |
595 |
2.77e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.