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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OQ580987.1 nt Scrophularia takesimensis voucher K... 152420 bp Scrophularia takesimensis QL-PLN-00-007 564 bp View
OQ621980.1 nt Bupleurum boissieuanum voucher zhc2... 155803 bp Bupleurum boissieuanum QL-PLN-00-007 576 bp View
OQ628308.1 nt Erythranthe tenella chromoplast, co... 154301 bp Erythranthe tenella QL-PLN-00-007 568 bp View
OQ628313.1 nt Mazus caducifer chloroplast, comple... 152849 bp Mazus caducifer QL-PLN-00-007 567 bp View
OQ628314.1 nt Mazus pumilus var. delavayi chlorop... 152847 bp Mazus pumilus var. delavayi QL-PLN-00-007 566 bp View
OQ628315.1 nt Dodartia orientalis chloroplast, co... 154271 bp Dodartia orientalis QL-PLN-00-007 571 bp View
OQ672920.1 nt Phlomoides eremostachydioides plast... 151585 bp Phlomoides eremostachydioides QL-PLN-00-007 562 bp View
OQ672921.1 nt Phlomoides labiosa plastid, complet... 151284 bp Phlomoides labiosa QL-PLN-00-007 562 bp View
OQ672922.1 nt Phlomoides thyrsiflora plastid, com... 151330 bp Phlomoides thyrsiflora QL-PLN-00-007 562 bp View
OQ672923.1 nt Phlomoides breviflora plastid, comp... 151856 bp Phlomoides breviflora QL-PLN-00-007 555 bp View
OQ672924.1 nt Phlomoides laciniata plastid, compl... 151334 bp Phlomoides laciniata QL-PLN-00-007 562 bp View
OQ672925.1 nt Phlomoides brachystegia plastid, co... 151482 bp Phlomoides brachystegia QL-PLN-00-007 562 bp View
OQ672926.1 nt Phlomoides cordifolia plastid, comp... 151572 bp Phlomoides cordifolia QL-PLN-00-007 562 bp View
OQ672927.1 nt Phlomoides tuvinica plastid, comple... 151766 bp Phlomoides tuvinica QL-PLN-00-007 562 bp View
OQ672928.1 nt Phlomoides puberula plastid, comple... 151761 bp Phlomoides puberula QL-PLN-00-007 562 bp View
OQ672929.1 nt Phlomoides sarawschanica plastid, c... 151323 bp Phlomoides sarawschanica QL-PLN-00-007 562 bp View
OQ672930.1 nt Phlomoides transoxana plastid, comp... 151531 bp Phlomoides transoxana QL-PLN-00-007 562 bp View
OQ672931.1 nt Phlomoides sewerzovii plastid, comp... 151587 bp Phlomoides sewerzovii QL-PLN-00-007 562 bp View
OQ672932.1 nt Phlomoides speciosa plastid, comple... 151288 bp Phlomoides speciosa QL-PLN-00-007 562 bp View
OQ672933.1 nt Phlomoides ebracteolata plastid, co... 151363 bp Phlomoides ebracteolata QL-PLN-00-007 562 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.