Match details
Record ID: |
OQ580987.1 |
Database: |
nt |
Go to original record |
Description: |
Scrophularia takesimensis voucher KIOM20210412 chloroplast, complete genome. |
Taxon: |
Scrophularia takesimensis |
Original size: |
152420 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47141 |
47704 |
+ |
564 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 ggctaaaaag gataggtgca gagactcaat ggaagctgtt ctaacaaatg
201 gagttgactg cgttggtaga gaaatctttc catcgaaact tcagaaaggg
251 tgacggataa acgtatctat tgaatactat atcaaatgat taatgatggc
301 ccgaatctgt atctttattt ttttatatga aaaatagaaa aattgatgtg
351 aatttattcc acattgaaga aagaatcaaa taaaatattc attcatcaaa
401 tcatccactc catagtctga tagttctttt aaagaactga ttaatcggac
451 gagaataaag atagagtccc attctacatg tcaataccgg caacaatgaa
501 atttatagta agaggaaaat ccgtcgactt ttaaaatcgt gagggttcaa
551 gtccctctat cccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
564 |
545 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.