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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON229569.1 nt Persicaria capitata voucher SD404 c... 158852 bp Persicaria capitata QL-PLN-00-007 592 bp View
ON229571.1 nt Persicaria filiformis voucher SD250... 159721 bp Persicaria filiformis QL-PLN-00-007 597 bp View
ON229577.1 nt Persicaria japonica voucher SD288 c... 159502 bp Persicaria japonica QL-PLN-00-007 593 bp View
ON229579.1 nt Persicaria lapathifolia voucher SD2... 159051 bp Persicaria lapathifolia QL-PLN-00-007 593 bp View
ON229580.1 nt Persicaria lapathifolia var. salici... 159049 bp Persicaria lapathifolia var. salicifolia QL-PLN-00-007 593 bp View
ON229582.1 nt Persicaria longiseta var. rotundata... 159401 bp Persicaria longiseta var. rotundata QL-PLN-00-007 600 bp View
ON229583.1 nt Persicaria longiseta var. rotundata... 159436 bp Persicaria longiseta var. rotundata QL-PLN-00-007 600 bp View
ON229584.1 nt Persicaria maackiana voucher SD307 ... 160682 bp Persicaria maackiana QL-PLN-00-007 596 bp View
ON229588.1 nt Persicaria orientalis voucher SD294... 159015 bp Persicaria orientalis QL-PLN-00-007 593 bp View
ON229589.1 nt Persicaria perfoliata voucher SD370... 160737 bp Persicaria perfoliata QL-PLN-00-007 601 bp View
ON229591.1 nt Persicaria runcinata voucher SD302 ... 158985 bp Persicaria runcinata QL-PLN-00-007 592 bp View
ON229593.1 nt Persicaria senticosa voucher SD309 ... 160589 bp Persicaria senticosa QL-PLN-00-007 601 bp View
ON229597.1 nt Persicaria viscosa voucher SD300 ch... 159065 bp Persicaria viscosa QL-PLN-00-007 593 bp View
ON229600.1 nt [Polygonum] chinense var. paradoxum... 159011 bp [Polygonum] chinense var. paradoxum QL-PLN-00-007 592 bp View
ON321894.1 nt Periploca forrestii chloroplast, co... 153724 bp Periploca forrestii QL-PLN-00-007 566 bp View
ON381173.1 nt Lilium amoenum chloroplast, complet... 153161 bp Lilium amoenum QL-PLN-00-007 605 bp View
ON381174.1 nt Lilium apertum chloroplast, complet... 152452 bp Lilium apertum QL-PLN-00-007 609 bp View
ON408217.1 nt Tetraena mongolica plastid, complet... 106170 bp Tetraena mongolica QL-PLN-00-007 537 bp View
ON408218.1 nt Tetraena mongolica plastid, complet... 106184 bp Tetraena mongolica QL-PLN-00-007 536 bp View
ON408219.1 nt Tetraena mongolica plastid, complet... 106176 bp Tetraena mongolica QL-PLN-00-007 536 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.