Match details
Record ID: |
ON321894.1 |
Database: |
nt |
Go to original record |
Description: |
Periploca forrestii chloroplast, complete genome. |
Taxon: |
Periploca forrestii |
Original size: |
153724 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47313 |
47878 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtaaggaa
51 acctactaag tgatgacttt caaattcaga gaaaccccgg aattaagaaa
101 aagggcaatc ctgagccaaa tcctatttta cacaaacaaa ggttcagaaa
151 acgaaaacaa ggataggtgc agagactcga cggaagatgt tctaacaaat
201 ggaggtggcc acgttcgtag agaaatcctt ccatcgaaaa ttcagaaagg
251 atgaaggata aacacatata catacgtatt gaatactata tcaaatgatt
301 atgccgaccc gaatgaatcc gtattttttc tataaaaaac ggaagaattg
351 gtgtgagtcg attctttcgt caatgtggaa tcgaatattc attgatcaaa
401 tgattcactc catagtctgt agatcccctt ttcaagaacg gattaatcgg
451 acgagaataa agatagagtc ccgttctaca tgtcaatgct ggcaacaatg
501 aaatttatag taagaggaaa atccgtcgac ttaaaaaatc gtgagggttc
551 aagtccctct atcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.