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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OL912836.1 nt Oryza nivara chloroplast, complete ... 134555 bp Oryza nivara QL-PLN-00-007 615 bp View
OL977687.1 nt Mimulicalyx rosulatus isolate Miyi ... 153587 bp Mimulicalyx rosulatus QL-PLN-00-007 569 bp View
OL977689.1 nt Antirrhinum majus subsp. striatum c... 152631 bp Antirrhinum majus subsp. striatum QL-PLN-00-007 561 bp View
OL977690.1 nt Antirrhinum majus var. pseudomajus ... 152619 bp Antirrhinum majus var. pseudomajus QL-PLN-00-007 561 bp View
OL977700.1 nt Eremophila latrobei subsp. filiform... 151550 bp Eremophila latrobei subsp. filiformis QL-PLN-00-007 557 bp View
OL977702.1 nt Eremophila maculata subsp. brevifol... 142336 bp Eremophila maculata subsp. brevifolia QL-PLN-00-007 564 bp View
OL977703.1 nt Eremophila magnifica subsp. magnifi... 151922 bp Eremophila magnifica subsp. magnifica QL-PLN-00-007 557 bp View
OL977704.1 nt Eremophila magnifica subsp. velutin... 151919 bp Eremophila magnifica subsp. velutina QL-PLN-00-007 557 bp View
OL977706.1 nt Eremophila platycalyx subsp. pardal... 151947 bp Eremophila platycalyx subsp. pardalota QL-PLN-00-007 567 bp View
OL999303.1 nt Melampyrum roseum var. japonicum vo... 143580 bp Melampyrum roseum var. japonicum QL-PLN-00-007 549 bp View
OL999304.1 nt Melampyrum roseum var. ovalifolium ... 143551 bp Melampyrum roseum var. ovalifolium QL-PLN-00-007 549 bp View
OL999306.1 nt Melampyrum roseum var. nakaianum vo... 143512 bp Melampyrum roseum var. nakaianum QL-PLN-00-007 549 bp View
OM001091.1 nt Ampelocalamus naibunensis voucher p... 139724 bp Ampelocalamus naibunensis QL-PLN-00-007 614 bp View
OM001092.1 nt Bambusa odashimae voucher personal ... 139516 bp Bambusa odashimae QL-PLN-00-007 613 bp View
OM001093.1 nt Bambusa pachinensis var. hirsutissi... 139491 bp Bambusa pachinensis var. hirsutissima QL-PLN-00-007 613 bp View
OM044392.1 nt Bougainvillea stipitata var. griseb... 154679 bp Bougainvillea stipitata var. grisebachiana QL-PLN-00-007 617 bp View
OM066074.1 nt Campsis grandiflora voucher D.T.W L... 154357 bp Campsis grandiflora QL-PLN-00-007 562 bp View
OM084949.1 nt Phyllostachys edulis f. bicolor chl... 139678 bp Phyllostachys edulis f. bicolor QL-PLN-00-007 614 bp View
OM174283.1 nt Papaver hultenii var. salmonicolor ... 153668 bp Papaver hultenii var. salmonicolor QL-PLN-00-007 596 bp View
OM174286.1 nt Papaver lapponicum subsp. occidenta... 153814 bp Papaver lapponicum subsp. occidentale QL-PLN-00-007 596 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.