Match details
Record ID: |
OL999303.1 |
Database: |
nt |
Go to original record |
Description: |
Melampyrum roseum var. japonicum voucher YNUH20210829_MRJ001 chloroplast, complete genome. |
Taxon: |
Melampyrum roseum var. japonicum |
Original size: |
143580 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46841 |
47389 |
+ |
549 bp |
|
1 cgaaatcggt agacgctacg gacttaatta aattgagcct tggtatggca
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaagaaa
101 aatgggcaat cctgagccaa ctcctgtttt ctcaaaacaa agattcagaa
151 aacaaaaaaa ggataggtgc agagactcta tggaagttgt tctaacaaat
201 ggagttgatt acgctggtag aggaatgaaa cttccgaaag gataaaggca
251 tctattgaat actatatcaa tatcaataaa ttgattaatg atggcccaaa
301 tctgtatctg tatttttgaa tacgcaaaag ggaagaagta gtgtgaattg
351 attccatatt gaaaaaagaa gattcattga tcaaataatt cactccataa
401 tccgatagat cgtttaaaga actgattaat cggacgagaa taaagataga
451 gtcccattct acatgtcaat accggcaaca atgaaattta tagtaagagg
501 aaaatccgtc gacttttaaa atcgtgaggg ttcaagtccc tctatcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.47e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
549 |
530 |
2.47e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.