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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OL581588.1 nt Bambusa utilis voucher personal col... 139499 bp Bambusa utilis QL-PLN-00-007 613 bp View
OL628864.1 nt Catalpa ovata chloroplast, complete... 158355 bp Catalpa ovata QL-PLN-00-007 563 bp View
OL628865.1 nt Catalpa bungei chloroplast, complet... 158143 bp Catalpa bungei QL-PLN-00-007 563 bp View
OL628866.1 nt Catalpa fargesii f. duclouxii chlor... 158164 bp Catalpa fargesii f. duclouxii QL-PLN-00-007 563 bp View
OL628867.1 nt Catalpa bungei chloroplast, complet... 158213 bp Catalpa bungei QL-PLN-00-007 563 bp View
OL628868.1 nt Catalpa fargesii f. duclouxii chlor... 158164 bp Catalpa fargesii f. duclouxii QL-PLN-00-007 563 bp View
OL628869.1 nt Catalpa fargesii chloroplast, compl... 157765 bp Catalpa fargesii QL-PLN-00-007 563 bp View
OL694048.2 nt Plantago asiatica chloroplast, comp... 164992 bp Plantago asiatica QL-PLN-00-007 585 bp View
OL754664.1 nt Hoya pottsii chloroplast, complete ... 175950 bp Hoya pottsii QL-PLN-00-007 550 bp View
OL789882.1 nt Coffea arabica chloroplast, complet... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OL790388.1 nt Meconopsis horridula voucher Tibet ... 153745 bp Meconopsis horridula QL-PLN-00-007 604 bp View
OL826865.1 nt Hoya liangii chloroplast, complete ... 177073 bp Hoya liangii QL-PLN-00-007 550 bp View
OL875077.1 nt Hoya sp. 2 WO-2022 chloroplast, com... 178729 bp Hoya sp. 2 WO-2022 QL-PLN-00-007 550 bp View
OL875078.1 nt Hoya sp. 4 WO-2022 chloroplast, com... 178838 bp Hoya sp. 4 WO-2022 QL-PLN-00-007 550 bp View
OL875079.1 nt Hoya sp. 8 WO-2022 chloroplast, com... 177198 bp Hoya sp. 8 WO-2022 QL-PLN-00-007 550 bp View
OL875080.1 nt Hoya sp. 11 WO-2022 chloroplast, co... 175905 bp Hoya sp. 11 WO-2022 QL-PLN-00-007 550 bp View
OL875081.1 nt Hoya sp. 3 WO-2022 chloroplast, com... 177781 bp Hoya sp. 3 WO-2022 QL-PLN-00-007 550 bp View
OL875302.1 nt Taraxacum mongolicum chloroplast, c... 151344 bp Taraxacum mongolicum QL-PLN-00-007 527 bp View
OL891645.1 nt Lycium chinense chloroplast, comple... 155713 bp Lycium chinense QL-PLN-00-007 571 bp View
OL891938.1 nt Elsholtzia splendens voucher YSG_KI... 151280 bp Elsholtzia splendens QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.