Match details
Record ID: |
OL628865.1 |
Database: |
nt |
Go to original record |
Description: |
Catalpa bungei chloroplast, complete genome. |
Taxon: |
Catalpa bungei |
Original size: |
158143 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47745 |
48307 |
+ |
563 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctttttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaggatagg tgcagagact caatggaagc tgttctaaca
201 aatggagttg gctgcgttgg tagaggaatc tttccatcga aacttcagaa
251 aggatgaagg ataaacgtat ctattgaata ctatatcaaa tgattaatga
301 tggcccgaat ctgtatctgt atttttttat atgaaaaatg gaagaattag
351 tgtgaattga ttccacattg aagaaagaat cgaatattca ttcatcaaat
401 cattcactcc atagtccgat agttctttta aagaactgat taagcggacg
451 agaataaaga tagagtccca ttctacatgt caataccggc aacaatgaaa
501 tttatagtaa gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag
551 tccctctatc ccc
View other 24 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
563 |
544 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.