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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW435408.1 nt Salvia nanchuanensis var. pteridifo... 151455 bp Salvia nanchuanensis var. pteridifolia QL-PLN-00-007 529 bp View
MW435409.1 nt Salvia plectranthoides voucher 0006... 151416 bp Salvia plectranthoides QL-PLN-00-007 529 bp View
MW435411.1 nt Salvia yunnanensis voucher 603 chlo... 151413 bp Salvia yunnanensis QL-PLN-00-007 529 bp View
MW463057.1 nt Bambusa intermedia chloroplast, com... 139446 bp Bambusa intermedia QL-PLN-00-007 613 bp View
MW463058.1 nt Indosasa hispida cultivar Rainbow c... 139690 bp Indosasa hispida QL-PLN-00-007 614 bp View
MW464332.1 nt Impatiens cyanantha chloroplast, co... 152375 bp Impatiens cyanantha QL-PLN-00-007 595 bp View
MW464334.1 nt Impatiens monticola chloroplast, co... 152692 bp Impatiens monticola QL-PLN-00-007 572 bp View
MW465412.1 nt Lilium bulbiferum chloroplast, comp... 152690 bp Lilium bulbiferum QL-PLN-00-007 608 bp View
MW470952.1 nt Anisodus luridus chloroplast, compl... 156045 bp Anisodus luridus QL-PLN-00-007 571 bp View
MW493387.1 nt Catalpa ovata chloroplast, complete... 158142 bp Catalpa ovata QL-PLN-00-007 563 bp View
MW525446.1 nt Sarcolobus globosus subsp. peregrin... 161561 bp Sarcolobus globosus subsp. peregrinus QL-PLN-00-007 550 bp View
MW538953.1 nt Clerodendrum bungei chloroplast, co... 151678 bp Clerodendrum bungei QL-PLN-00-007 545 bp View
MW544010.1 nt Bambusa vulgaris voucher 101306 chl... 139528 bp Bambusa vulgaris QL-PLN-00-007 613 bp View
MW557324.1 nt Bambusa albolineata chloroplast, co... 139326 bp Bambusa albolineata QL-PLN-00-007 613 bp View
MW557547.1 nt Diospyros kaki chloroplast, complet... 157773 bp Diospyros kaki QL-PLN-00-007 585 bp View
MW557548.1 nt Bougainvillea spectabilis x Bougain... 154541 bp Bougainvillea spectabilis x Bougainvillea glabra QL-PLN-00-007 615 bp View
MW557550.1 nt Bougainvillea peruviana cultivar Mo... 154541 bp Bougainvillea peruviana QL-PLN-00-007 615 bp View
MW559061.1 nt Averrhoa dolichocarpa voucher SKS04... 976 bp Averrhoa dolichocarpa QL-PLN-00-007 567 bp View
MW559062.1 nt Averrhoa dolichocarpa voucher EAW88... 978 bp Averrhoa dolichocarpa QL-PLN-00-007 567 bp View
MW559063.1 nt Averrhoa leucopetala voucher SKS05 ... 968 bp Averrhoa leucopetala QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.