Match details
Record ID: |
MW557547.1 |
Database: |
nt |
Go to original record |
Description: |
Diospyros kaki chloroplast, complete genome. |
Taxon: |
Diospyros kaki |
Original size: |
157773 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49521 |
50105 |
+ |
585 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgattt tcgaaaacaa acaaagattc
151 agaaagcgaa aataaaaaaa ggataggtgc agagactcaa tggaagctgt
201 tctaacaaat ggagttgact gcgttggtag aggaatcctt ccatcgaaat
251 tttcgaaagg atgaaagaga aacctatata catacgcata cgtactgaaa
301 tactatagca aacgattaat gacgacgcaa atctgtatgc gtattttttt
351 tatatgaaaa tggaagaatt gttgcgaatc gattcgacat tgaataaaga
401 attgactatt cattgatcaa atcatttact ccatagtctg atagatcttt
451 tgaagaactg attaatcgga cgagaataaa gatagagtcc cattctacat
501 gtcaataccg acaacaatga aatttatagt aagaggaaaa tccgtcgact
551 ttaaaaatcg tgagggttca agtccctcta tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.63e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
585 |
566 |
2.63e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.