European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW057690.1 nt Orinus thoroldii chloroplast, compl... 134190 bp Orinus thoroldii QL-PLN-00-007 613 bp View
MW075109.1 nt Phyllostachys heteroclada f. solida... 139678 bp Phyllostachys heteroclada f. solida QL-PLN-00-007 614 bp View
MW085076.1 nt Lilium souliei chloroplast, complet... 152453 bp Lilium souliei QL-PLN-00-007 609 bp View
MW123901.1 nt Bougainvillea peruviana voucher 201... 153966 bp Bougainvillea peruviana QL-PLN-00-007 611 bp View
MW133235.1 nt Orinus kokonoricus chloroplast, com... 134454 bp Orinus kokonoricus QL-PLN-00-007 613 bp View
MW136391.1 nt Lilium nepalense chloroplast, compl... 152242 bp Lilium nepalense QL-PLN-00-007 609 bp View
MW145135.1 nt Lilium regale chloroplast, complete... 152998 bp Lilium regale QL-PLN-00-007 605 bp View
MW148796.1 nt Chilopsis linearis voucher BOP08607... 158436 bp Chilopsis linearis QL-PLN-00-007 563 bp View
MW148797.1 nt Chilopsis linearis voucher BOP22307... 158431 bp Chilopsis linearis QL-PLN-00-007 563 bp View
MW148798.1 nt Catalpa purpurea voucher ENC850158 ... 158105 bp Catalpa purpurea QL-PLN-00-007 563 bp View
MW148799.1 nt Catalpa bignonioides voucher ENC850... 158238 bp Catalpa bignonioides QL-PLN-00-007 563 bp View
MW148800.1 nt Catalpa bignonioides voucher ENC850... 158238 bp Catalpa bignonioides QL-PLN-00-007 563 bp View
MW148801.1 nt Catalpa speciosa voucher ENC850153 ... 158240 bp Catalpa speciosa QL-PLN-00-007 564 bp View
MW148804.1 nt Catalpa speciosa voucher K138 chlor... 158240 bp Catalpa speciosa QL-PLN-00-007 563 bp View
MW148807.1 nt Catalpa ovata voucher BOP223072 chl... 158203 bp Catalpa ovata QL-PLN-00-007 563 bp View
MW148808.1 nt Catalpa ovata voucher K137 chloropl... 158316 bp Catalpa ovata QL-PLN-00-007 563 bp View
MW148809.1 nt Catalpa fargesii f. duclouxii vouch... 158185 bp Catalpa fargesii f. duclouxii QL-PLN-00-007 563 bp View
MW148810.1 nt Catalpa fargesii f. duclouxii vouch... 158250 bp Catalpa fargesii f. duclouxii QL-PLN-00-007 563 bp View
MW148812.1 nt Catalpa fargesii voucher ENC850156 ... 157550 bp Catalpa fargesii QL-PLN-00-007 563 bp View
MW148813.1 nt Catalpa fargesii voucher K134 chlor... 157859 bp Catalpa fargesii QL-PLN-00-007 563 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.