Match details
Record ID: |
MW057690.1 |
Database: |
nt |
Go to original record |
Description: |
Orinus thoroldii chloroplast, complete genome. |
Taxon: |
Orinus thoroldii |
Original size: |
134190 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46307 |
46919 |
+ |
613 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acttgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaacaagtg gttctcaaac
151 tagaacccaa aggaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacgaatcga ggtgtaatta cgttgtgttg gtagtgaaac tccctctaaa
251 ttacaaagaa gggctttata catctaatac acacgtatag atactgacat
301 agcaaacgat taatcacaga acccatacca taatataggt tctttattta
351 ttttttagaa tgaaattagg aatgattatg aaatagaaaa ttctgaattt
401 tttttagaat tattgtgaat acattccact cgaatattga gtaatcaaat
451 ccttcaattc attgtttttg agatatttta aaaatagaat taatcggacg
501 aggataaaga gagagtccca ttctacatgt caatactgac aacaatgaaa
551 tttctagtaa aaggaaaatc cgtcgacttt ataagtcgtg agggttcaag
601 tccctctatc ccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.76e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
613 |
594 |
2.76e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.