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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY319093.1 nt Meiogyne cylindrocarpa tRNA-Leu (tr... 972 bp Meiogyne cylindrocarpa QL-PLN-00-007 576 bp View
AY319094.1 nt Meiogyne virgata tRNA-Leu (trnL) ge... 980 bp Meiogyne virgata QL-PLN-00-007 576 bp View
AY319095.1 nt Mezzettia parviflora tRNA-Leu (trnL... 953 bp Mezzettia parviflora QL-PLN-00-007 572 bp View
AY319096.1 nt Miliusa campanulata tRNA-Leu (trnL)... 958 bp Miliusa campanulata QL-PLN-00-007 562 bp View
AY319097.1 nt Miliusa cuneata tRNA-Leu (trnL) gen... 958 bp Miliusa cuneata QL-PLN-00-007 562 bp View
AY319098.1 nt Miliusa horsfieldii tRNA-Leu (trnL)... 957 bp Miliusa horsfieldii QL-PLN-00-007 562 bp View
AY319100.1 nt Miliusa longipes tRNA-Leu (trnL) ge... 958 bp Miliusa longipes QL-PLN-00-007 562 bp View
AY319101.1 nt Miliusa mollis var. mollis tRNA-Leu... 958 bp Miliusa mollis var. mollis QL-PLN-00-007 562 bp View
AY319103.1 nt Miliusa sp. Middleton and Lamxay 26... 958 bp Miliusa sp. Middleton and Lamxay 269 QL-PLN-00-007 562 bp View
AY319104.1 nt Miliusa thorelii tRNA-Leu (trnL) ge... 958 bp Miliusa thorelii QL-PLN-00-007 562 bp View
AY319105.1 nt Miliusa velutina tRNA-Leu (trnL) ge... 957 bp Miliusa velutina QL-PLN-00-007 562 bp View
AY319106.1 nt Mitrephora alba tRNA-Leu (trnL) gen... 971 bp Mitrephora alba QL-PLN-00-007 575 bp View
AY319107.1 nt Mitrephora celebica tRNA-Leu (trnL)... 972 bp Mitrephora celebica QL-PLN-00-007 576 bp View
AY319108.1 nt Mitrephora keithii tRNA-Leu (trnL) ... 971 bp Mitrephora keithii QL-PLN-00-007 575 bp View
AY319109.1 nt Mitrephora maingayi tRNA-Leu (trnL)... 971 bp Mitrephora maingayi QL-PLN-00-007 575 bp View
AY319110.1 nt Mitrephora polypyrena tRNA-Leu (trn... 970 bp Mitrephora polypyrena QL-PLN-00-007 575 bp View
AY319111.1 nt Monocarpia euneura tRNA-Leu (trnL) ... 974 bp Monocarpia euneura QL-PLN-00-007 576 bp View
AY319112.1 nt Neo-uvaria acuminatissima tRNA-Leu ... 986 bp Neo-uvaria acuminatissima QL-PLN-00-007 577 bp View
AY319113.1 nt Neo-uvaria parallelivenia tRNA-Leu ... 985 bp Neo-uvaria parallelivenia QL-PLN-00-007 577 bp View
AY319114.1 nt Craibella phuyensis tRNA-Leu (trnL)... 980 bp Pseuduvaria phuyensis QL-PLN-00-007 576 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.