Match details
Record ID: |
AY319110.1 |
Database: |
nt |
Go to original record |
Description: |
Mitrephora polypyrena tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Mitrephora polypyrena |
Original size: |
970 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
575 |
+ |
575 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgagaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgtgttcag aaaacaaggt ttagaaagcg
151 agaatcaaaa acagaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacaaata gagttgactg cattggtagg ggaattcttt ccttctatcc
251 aaacgacaga aaggatgact tgtatacgta cgtatacata ctgaaacatc
301 aaacgattaa tcacgactcg aatcagtctt tttttatatg aaaaatttca
351 gaatagaagg attgtgattt gattccaagt tgaaggaaga atcaaatatt
401 cagagatcaa atcattcatt cccgagttta atagatcttt cgaataactg
451 attaatcgga cgagaataaa gatagagtcc cattctacat gtcaatacag
501 acaacaatga aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg
551 tgagggttca agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.59e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
575 |
556 |
2.59e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.