Match details
Record ID: |
AY319096.1 |
Database: |
nt |
Go to original record |
Description: |
Miliusa campanulata tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Miliusa campanulata |
Original size: |
958 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
563 |
+ |
562 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tagtatggaa
51 acctactaag tgagaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ctgtgttcag aaagcgagaa tcaaaaacag
151 aaaaaggata ggtgcagaga ctcaatggaa gccgttctaa caaatagagt
201 tgactgcatt ggtaggggaa ttctttcctt ctatccaaac gacagaaagg
251 atgaccttgt atacgtacgt atacatactg aaacatcaaa cgattaatca
301 cgactcgaat cagtcttttt ttctatgaaa aatttcagaa tagaaggatt
351 gtgatttgat tccaagttga aggaggaatc gaatattcag agatcaaatc
401 attcattccc gagtctaata gatctttaga ataactgatt aatcggacga
451 gaataaagat agagtcccat tctacatgtc aatacagaca acaatgaaat
501 ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt
551 ccctctatcc cc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.