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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT806747.1 nt Fritillaria przewalskii isolate ZDQ... 152067 bp Fritillaria przewalskii QL-PLN-00-007 607 bp View
MT806748.1 nt Fritillaria sichuanica isolate ZDQ1... 152032 bp Fritillaria sichuanica QL-PLN-00-007 607 bp View
MT806749.1 nt Fritillaria taipaiensis isolate ZDQ... 151716 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MT806750.1 nt Fritillaria taipaiensis isolate ZDQ... 151691 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MT806751.1 nt Fritillaria taipaiensis isolate ZDQ... 151691 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MT806752.1 nt Fritillaria taipaiensis isolate ZDQ... 151721 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MT806753.1 nt Fritillaria taipaiensis isolate ZDQ... 151715 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MT806754.1 nt Fritillaria taipaiensis isolate GZD... 151692 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MT806755.1 nt Fritillaria cirrhosa isolate ZDQ180... 151540 bp Fritillaria cirrhosa QL-PLN-00-007 607 bp View
MT843581.1 nt Bambusa beecheyana var. pubescens i... 139402 bp Bambusa beecheyana var. pubescens QL-PLN-00-007 613 bp View
MT893744.1 nt Catalpa bungei chloroplast, complet... 158109 bp Catalpa bungei QL-PLN-00-007 563 bp View
MT937187.1 nt Mazus pumilus voucher PDBK 2008-124... 152847 bp Mazus pumilus QL-PLN-00-007 567 bp View
MT942627.1 nt Dichanthium sericeum chloroplast, p... 137987 bp Dichanthium sericeum QL-PLN-00-007 525 bp View
MT942628.1 nt Coix aquatica chloroplast, partial ... 140995 bp Coix aquatica QL-PLN-00-007 525 bp View
MT942630.1 nt Sarga versicolor chloroplast, parti... 140930 bp Sarga versicolor QL-PLN-00-007 526 bp View
MT942631.1 nt Andropogon hallii chloroplast, part... 134274 bp Andropogon hallii QL-PLN-00-007 525 bp View
MT942632.1 nt Schizachyrium sanguineum chloroplas... 139319 bp Schizachyrium sanguineum QL-PLN-00-007 525 bp View
MT948145.1 nt Phryma leptostachya subsp. asiatica... 153324 bp Phryma leptostachya subsp. asiatica QL-PLN-00-007 561 bp View
MT950760.1 nt Alloteropsis cimicina chloroplast, ... 139335 bp Alloteropsis cimicina QL-PLN-00-007 613 bp View
MT955897.1 nt Lycium ruthenicum chloroplast, comp... 154911 bp Lycium ruthenicum QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.