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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN814867.1 nt Rotheca serrata chloroplast, comple... 150371 bp Rotheca serrata QL-PLN-00-007 552 bp View
MN814868.1 nt Schnabelia oligophylla chloroplast,... 156768 bp Schnabelia oligophylla QL-PLN-00-007 543 bp View
MN814869.1 nt Scutellaria amoena chloroplast, com... 151830 bp Scutellaria amoena QL-PLN-00-007 556 bp View
MN814870.1 nt Tectona grandis chloroplast, comple... 153953 bp Tectona grandis QL-PLN-00-007 556 bp View
MN848245.1 nt Justicia procumbens chloroplast, co... 150471 bp Justicia procumbens QL-PLN-00-007 562 bp View
MN848249.1 nt Justicia adhatoda chloroplast, comp... 149503 bp Justicia adhatoda QL-PLN-00-007 563 bp View
MN866909.1 nt Lycium ferocissimum chloroplast, co... 155894 bp Lycium ferocissimum QL-PLN-00-007 571 bp View
MN872235.1 nt Hemerocallis citrina chloroplast, c... 156088 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
MN894550.1 nt Coffea arabica isolate CH1 chloropl... 155189 bp Coffea arabica QL-PLN-00-007 570 bp View
MN894551.1 nt Coffea arabica isolate CH2 chloropl... 155189 bp Coffea arabica QL-PLN-00-007 570 bp View
MN894552.1 nt Coffea arabica isolate CM chloropla... 155189 bp Coffea arabica QL-PLN-00-007 570 bp View
MN901638.1 nt Coffea arabica strain bourbon chlor... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
MN916546.1 nt Lycium barbarum clone V12L0001 Ning... 1089 bp Lycium barbarum QL-PLN-00-007 571 bp View
MN916555.1 nt Lycium barbarum clone V12L0030 Ning... 1089 bp Lycium barbarum QL-PLN-00-007 571 bp View
MN916556.1 nt Lycium barbarum clone V12L0018 Yuan... 1073 bp Lycium barbarum QL-PLN-00-007 571 bp View
MN916560.1 nt Lycium barbarum clone V12L0043 Dahu... 1089 bp Lycium barbarum QL-PLN-00-007 571 bp View
MN916563.1 nt Lycium chinense clone V12L0014 Beif... 1089 bp Lycium chinense QL-PLN-00-007 571 bp View
MN916570.1 nt Lycium dasystemum clone V12L0010 Xi... 1089 bp Lycium dasystemum QL-PLN-00-007 571 bp View
MN916574.1 nt Lycium yunnanense clone V12L0040 AN... 1128 bp Lycium yunnanense QL-PLN-00-007 571 bp View
MN916575.1 nt Lycium hybrid cultivar clone V12L00... 1128 bp Lycium hybrid cultivar QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.