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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK123529.1 nt Rothmannia capensis voucher Bremer ... 1726 bp Rothmannia capensis QL-PLN-00-007 567 bp View
MK123530.1 nt Rothmannia fischeri voucher Luke & ... 1726 bp Rothmannia fischeri QL-PLN-00-007 567 bp View
MK123534.1 nt Rothmannia longiflora voucher SUC88... 1721 bp Rothmannia longiflora QL-PLN-00-007 567 bp View
MK123537.1 nt Singaporandia macrophylla voucher W... 1717 bp Singaporandia macrophylla QL-PLN-00-007 567 bp View
MK123538.1 nt Rothmannia manganjae voucher Halle ... 1721 bp Rothmannia manganjae QL-PLN-00-007 567 bp View
MK123539.1 nt Rothmannia munsae voucher Halle 903... 1739 bp Rothmannia munsae QL-PLN-00-007 567 bp View
MK123545.1 nt Rothmannia talbotii voucher Letouze... 1411 bp Rothmannia talbotii QL-PLN-00-007 567 bp View
MK123546.1 nt Rothmannia urcelliformis voucher Hy... 1725 bp Rothmannia urcelliformis QL-PLN-00-007 567 bp View
MK141603.1 nt Anthospermum aethiopicum isolate cX... 1738 bp Anthospermum aethiopicum QL-PLN-00-007 591 bp View
MK141604.1 nt Anthospermum sp. Phillipson 4487 is... 1642 bp Anthospermum sp. Phillipson 4487 QL-PLN-00-007 591 bp View
MK141606.1 nt Anthospermum bergianum isolate aL49... 1524 bp Anthospermum bergianum QL-PLN-00-007 593 bp View
MK141608.1 nt Anthospermum dregei isolate aL83 tR... 1658 bp Anthospermum dregei QL-PLN-00-007 592 bp View
MK141612.1 nt Anthospermum esterhuysenianum isola... 1707 bp Anthospermum esterhuysenianum QL-PLN-00-007 590 bp View
MK141613.1 nt Anthospermum herbaceum isolate cX90... 1711 bp Anthospermum herbaceum QL-PLN-00-007 591 bp View
MK141614.1 nt Anthospermum hispidulum isolate cX5... 1700 bp Anthospermum hispidulum QL-PLN-00-007 591 bp View
MK141615.1 nt Anthospermum ibityense isolate cY70... 1675 bp Anthospermum ibityense QL-PLN-00-007 591 bp View
MK141616.1 nt Anthospermum madagascariense isolat... 1657 bp Anthospermum madagascariense QL-PLN-00-007 591 bp View
MK141617.1 nt Anthospermum monticola isolate cX60... 1673 bp Anthospermum monticola QL-PLN-00-007 591 bp View
MK141619.1 nt Anthospermum palustre isolate cY73 ... 1663 bp Anthospermum palustre QL-PLN-00-007 585 bp View
MK141620.1 nt Anthospermum paniculatum isolate cX... 1652 bp Anthospermum paniculatum QL-PLN-00-007 591 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.