Match details
Record ID: |
MK141616.1 |
Database: |
nt |
Go to original record |
Description: |
Anthospermum madagascariense isolate cX59 tRNA-Thr (trnT(UGU)) gene, partial sequence; trnT-trnL intergenic spacer and tRNA-Leu (trnL(UAA)) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Anthospermum madagascariense |
Original size: |
1657 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
730 |
1320 |
+ |
591 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgggcct tggtatggaa
51 acccgctgag tgagaacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctatttt ccgaaaacaa aggttcagaa
151 agtgaaaaaa agggaaaggg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg agttggctgc ggtagtcaag aagtctttcc atcaaaaatt
251 cataaactat aagtattaag gatgaagtga aggataaacg tatatacata
301 cgtagtcaat agtatattaa atgagtaatg ataacccgaa tgaatcttta
351 tttttctata aaaaaataaa gaattgttct taatagattc cacgtttaga
401 aaagaatcga atattcattg atcaaatgat tcactccata gtctgataga
451 tcctttcacg aactgattaa tcggacgaga ataaagatag agtcccattc
501 tacatgtcaa tgtcggcaac aatgaaattt atagttaaga ggaaaatccg
551 tcgactttta aaatcgtgag ggttcaagtc cctctatccc c
View other 13 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
591 |
572 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.