Match details
Record ID: |
MK141603.1 |
Database: |
nt |
Go to original record |
Description: |
Anthospermum aethiopicum isolate cX47 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL(UAA)) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF(GAA)) gene, partial sequence; chloroplast. |
Taxon: |
Anthospermum aethiopicum |
Original size: |
1738 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
760 |
1350 |
+ |
591 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgggcct tggtatggaa
51 acccgctgag tgagaacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctatttt ccgaaaacaa aggttcagaa
151 agtgaaaaaa agggaaaggg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg agttggctgc ggtagtcaag aagtctttcc atcaaaaatt
251 cataaactat aagtattaag gatgaagtga aggataaacg tatatacata
301 cgtagtcaat agtatattaa atgagtaatg ataacccgaa tgaatcttta
351 tttttctata aaaaaataaa gaattgttct taatagattc cacgtttaga
401 aaagaatcga atattcattg atcaaatgat tcactccata gtctgataga
451 tcctttcacg aactgattaa tcggatgaga ataaagatag agtcccattc
501 tacatgtcaa tgtcggcaac aatgaaattt atagttaaga ggaaaatccg
551 tcgactttta aaatcgtgag ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
591 |
572 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.