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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LS398101.1 nt Miscanthus sinensis genome assembly... 141294 bp Miscanthus sinensis QL-PLN-00-007 526 bp View
LS398102.1 nt Miscanthus oligostachyus genome ass... 141387 bp Miscanthus oligostachyus QL-PLN-00-007 526 bp View
LS398103.1 nt Sorghum arundinaceum genome assembl... 140821 bp Sorghum arundinaceum QL-PLN-00-007 523 bp View
LS398104.1 nt Sorghum versicolor genome assembly,... 140951 bp Sorghum versicolor QL-PLN-00-007 526 bp View
LS398105.1 nt Sorghum halepense genome assembly, ... 140810 bp Sorghum halepense QL-PLN-00-007 523 bp View
LS398106.1 nt Sorghum x drummondii genome assembl... 140754 bp Sorghum bicolor subsp. drummondii QL-PLN-00-007 523 bp View
LS398107.1 nt Sorghum timorense genome assembly, ... 140682 bp Sorghum timorense QL-PLN-00-007 526 bp View
LS423604.1 nt Sorghum propinquum genome assembly,... 140753 bp Sorghum propinquum QL-PLN-00-007 523 bp View
LS453397.1 nt Iresine nitens trnT-trnL intergenic... 1037 bp Iresine nitens QL-PLN-00-007 556 bp View
LS453398.1 nt Iresine nitens trnT-trnL intergenic... 1029 bp Iresine nitens QL-PLN-00-007 556 bp View
LS453401.1 nt Iresine pringlei trnT-trnL intergen... 1049 bp Iresine pringlei QL-PLN-00-007 548 bp View
LS453403.1 nt Iresine latifolia trnT-trnL interge... 1027 bp Iresine latifolia QL-PLN-00-007 547 bp View
LS974680.1 nt Miscanthus capensis genome assembly... 141213 bp Miscanthus capensis QL-PLN-00-007 526 bp View
LS974681.1 nt Saccharum spontaneum genome assembl... 141407 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
LS974682.1 nt Miscanthus capensis genome assembly... 140484 bp Miscanthus capensis QL-PLN-00-007 526 bp View
LS975122.1 nt Saccharum spontaneum genome assembl... 141319 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
LS975126.1 nt Saccharum spontaneum genome assembl... 141206 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
LS975128.1 nt Saccharum spontaneum genome assembl... 141280 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
LS975129.1 nt Saccharum hybrid cultivar genome as... 141095 bp Saccharum hybrid cultivar QL-PLN-00-007 526 bp View
LS975130.1 nt Saccharum spontaneum genome assembl... 141371 bp Saccharum spontaneum QL-PLN-00-007 526 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.