Match details
Record ID: |
LS398106.1 |
Database: |
nt |
Go to original record |
Description: |
Sorghum x drummondii genome assembly, organelle: plastid |
Taxon: |
Sorghum bicolor subsp. drummondii |
Original size: |
140754 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49219 |
49741 |
+ |
523 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc cacttttttc aaaaaagtgg ttctcaaact
151 agaacccaaa ggaaaaggat aggtgcagag actcaatgga agctgttcta
201 acgaatcgaa gtaataacga ttaatcacag aacccatatt ataatatagg
251 ttctttattt tattttgaga atgaaattag gaatgattat gaaatagaaa
301 attcataatt tttttagaat tattgtgaat ctattccaat cgaatattga
351 gtaatcaaat ccttcaattc attgttttcg agatctttta aaaagtggat
401 taatcggacg aggataaaga gagagtccca ttctacatgt caatactgac
451 aacaatgaaa tttctagtaa aaggaaaatc cgtcgacttt ataagtcgtg
501 agggttcaag tccctctatc ccc
View other 9 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.35e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
523 |
504 |
2.35e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.