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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LR537493.1 nt Brachypodium distachyon genome asse... 135059 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537494.1 nt Brachypodium distachyon genome asse... 135150 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537495.1 nt Brachypodium distachyon genome asse... 135145 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537496.1 nt Brachypodium distachyon genome asse... 135133 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537497.1 nt Brachypodium distachyon genome asse... 135196 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537498.1 nt Brachypodium distachyon genome asse... 135140 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537500.1 nt Brachypodium distachyon genome asse... 135159 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537501.1 nt Brachypodium distachyon genome asse... 135147 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537502.1 nt Brachypodium distachyon genome asse... 135162 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537503.1 nt Brachypodium distachyon genome asse... 135146 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537504.1 nt Brachypodium hybridum genome assemb... 135423 bp Brachypodium hybridum QL-PLN-00-007 617 bp View
LR537505.1 nt Brachypodium hybridum genome assemb... 136329 bp Brachypodium hybridum QL-PLN-00-007 612 bp View
LR537506.1 nt Brachypodium hybridum genome assemb... 135145 bp Brachypodium hybridum QL-PLN-00-007 617 bp View
LR537507.1 nt Brachypodium hybridum genome assemb... 136327 bp Brachypodium hybridum QL-PLN-00-007 612 bp View
LR537508.1 nt Brachypodium hybridum genome assemb... 136328 bp Brachypodium hybridum QL-PLN-00-007 612 bp View
LR537509.1 nt Brachypodium hybridum genome assemb... 136328 bp Brachypodium hybridum QL-PLN-00-007 612 bp View
LR537510.1 nt Brachypodium hybridum genome assemb... 136328 bp Brachypodium hybridum QL-PLN-00-007 612 bp View
LR890023.1 nt Musa schizocarpa genome assembly, c... 269415 bp Musa schizocarpa QL-PLN-00-007 594 bp View
LR890024.1 nt Musa schizocarpa genome assembly, c... 206939 bp Musa schizocarpa QL-PLN-00-007 611 bp View
LR890024.1 nt Musa schizocarpa genome assembly, c... 206939 bp Musa schizocarpa QL-PLN-00-007 594 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.